PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30138.m004061 | ||||||||
Common Name | RCOM_1471600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 363aa MW: 41621.1 Da PI: 6.5845 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.7 | 3.6e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+ + +++fs+tgk 30138.m004061 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53 689****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.511 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-27 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-21 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IHIVLLMFSP TGKPTLFHGD 60 HSNIEDVIAK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS QTVEELTDQV 120 RLMQAQLTEV QQRLSYWSDP DKVDRIEHLR QMEDSLKESI NQLRMHKEDI GKCQLMPLEC 180 NNQFQSGIAL PYMINGLQEA QPLSWLPNNG NQHLIISNEP SFLPQRDIEC TTNASLPGYS 240 GFYDTGKQTE IGKPGPVDNM GQEGGALRSL SSNTCLNVQL DEQFLYPPYS SLNLPDVKEV 300 KPEMQMNNQG NHTVYQVNSN FELPRPMYDN EHHTWFSASG PCSIAMFNEN PYHQNNWSSF 360 FWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 7e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 7e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 7e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30138.m004061 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU896425 | 7e-35 | KU896425.1 Hibiscus cannabinus microsatellite HC_ES_49_GAG sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572066.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q7X9I0 | 1e-106 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | B9RLX3 | 0.0 | B9RLX3_RICCO; Mads box protein, putative | ||||
STRING | XP_002514742.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-108 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | 30138.m004061 |
Publications ? help Back to Top | |||
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