PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m004021
Common NameRCOM_1470600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 440aa    MW: 48424.6 Da    PI: 8.3415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m004021genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16251297455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  30138.m004021 251 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 297
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.79E-17242301No hitNo description
SuperFamilySSF474596.94E-19244308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-19251307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-14251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSQCIVPKWN LRHQRQELVE GEESIRSSHV YPHSHSHSHS HSHNLQNPTT HLVPMPNHEI  60
AELTWENGQI AMHGLGGFVH PSQTKATWGR TNETLESIVH QATCHNQNLN SNQQGEKQSH  120
QPTIASSTVA SSDGKWAETS SGHQAGMAPL LMKKRTRSES NQCARSFNGS TREEHMDLSA  180
CASASATFCR ESDTTMMTWA SFESPPPSLK AKTTDEDSAS HGGSENQDED RETKTETVRS  240
HSSRRTRAAA VHNQSERRRR DRINQKMKAL QKLVPNASKT DKASMLDEVI EYLKQLQAQV  300
QAMSVRNMPQ MMMPLGMQQQ LQMSLLARMG MGVSLGMGMG MLDMSNMAHS APQSLPPFIH  360
PTQAAASAPT FVPPPFVVPS MIPAHGSAPP ASHDPATNNS VPLPDPYCSL LAQVCGVVNL  420
MGKKNIIKTI KTFGFFFLTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m004021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571977.10.0transcription factor PIF7 isoform X1
TrEMBLB9RLT30.0B9RLT3_RICCO; DNA binding protein, putative
STRINGXP_002514702.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-34bHLH family protein