PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m003959
Common NameLOC8263441, RCOM_1469470
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 371aa    MW: 41211.6 Da    PI: 8.289
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m003959genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.9e-30512013129
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 
                    g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k  i++l+ ++ ++      +++ +s +snss++         
  30138.m003959  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKDDIDKLPPLQLPQGFGQfHQQMLVSHESNSSQSslapffdvn 146
                    79*************************************************************555552223333333333333333344566654 PP

            TCP  89 ..............kaaksaakskksqksaasalnlakesr..............akararare.rtrek 129
                                  k                +++nl+ +++              a+ ++ra   +t+ek
  30138.m003959 147 stfnkdigfhslgiK---------------VNNSNLDGDHQnsiimgktkyweaeAETSMRATSsSTSEK 201
                    344444444443330...............2222222222222333333333333444555444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.23152110IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2952211IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MITSSREKGF QAKQEGDAND NNKKFSKAPS TSRQWSAFRN PRIVRVSRSF GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVIDWLL DATKDDIDKL PPLQLPQGFG  120
QFHQQMLVSH ESNSSQSSLA PFFDVNSTFN KDIGFHSLGI KVNNSNLDGD HQNSIIMGKT  180
KYWEAEAETS MRATSSSTSE KGKWVRTNDH EENQDGVLSA QKLFPLASTH SSFPGLLNNP  240
IPFNSHYHWD ASNLSLSQFG TNHGMIIPQP ENSALDSNTS TVALPAFSSG SQFFLCPPAT  300
VSSLFPQYPP YVATPLENNE PRETNHFQWL TSSSANNPMK NFSLGVNPGL VHHHSQRNSA  360
SQPDKDNAAD T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1857111155Putative transcription factor PCF6
5zkt_B1e-1857111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m003959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514641.10.0transcription factor TCP5 isoform X2
RefseqXP_025012338.10.0transcription factor TCP5 isoform X1
TrEMBLB9RLM20.0B9RLM2_RICCO; Transcription factor, putative
STRINGXP_002514641.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-62TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5