PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m003913
Common NameLOC8264673, RCOM_1467110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 567aa    MW: 62475.1 Da    PI: 8.037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m003913genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.7e-17265313254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r +h++ E+rRR++iN++f+ Lrel+P+     ++K +Ka+ L +++eYI+ L
  30138.m003913 265 RSKHSATEQRRRSKINDRFQMLRELIPHG----DQKRDKASFLLEVIEYIQFL 313
                    889*************************7....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-24260335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-18262334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.895263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-14265318No hitNo description
PfamPF000102.8E-14265313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MELPQQQRIF EAEGRKPTHN FLSLYSHSTV QQDPRPPSSQ GYLKTHDFLQ PLERIGKTAA  60
KEETAAEVSS HEKPSPPALP PSMEHTLPGG IGTYSISHIS NYFNQKVPKP EGSPIFTVAQ  120
ASSIEKNEEH SNCSSYTGSG FTLWEESAIN KGKTGKENVG ERSNAVTEEA AGNVDRWTTP  180
ERPSQSSTNN HRNSFSSLSS SQPSGQKSQS FMEMIKSAKD SSQDDKLDEE EEFVLKKETP  240
SPIRKGELRV KVDGKSTDQK ANTPRSKHSA TEQRRRSKIN DRFQMLRELI PHGDQKRDKA  300
SFLLEVIEYI QFLHEKVHKY EGSYQRWNNE PAKLVPWRNG SRSVESYVDQ SRGSNSGASP  360
ALLFAAKLEE KNINLSPSVP GSAQNRVESD VNSATTFMVD HYPGMTNKGM PFPVSLQPNF  420
FNCGRNGGAV AQLPPRLVSD VENTASQPES QSNQTRSCTT EGAVAVDKLK EQQLSIEGGT  480
INISSVYSQG LLNTLTQALQ SSGVDLSQAS ISVQIDLGKR ANRQSNIPTS INKDNEVPSC  540
NQGTIRPRVS SGEESDHALK KLKTSKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m003913
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514597.10.0transcription factor BIM1 isoform X1
RefseqXP_015572073.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-128BIM1_ARATH; Transcription factor BIM1
TrEMBLB9RLH80.0B9RLH8_RICCO; Transcription factor BIM1, putative
STRINGXP_002514597.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-127bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]