PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30138.m003866 | ||||||||
Common Name | LOC8264628, RCOM_1465160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 22905.5 Da PI: 6.1557 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.8 | 6.5e-15 | 84 | 141 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK++ ++eL v L +eN+ L+++l++ ++ +++ +e 30138.m003866 84 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHVSECHDRVLQE 141 79********************************************999877666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.1E-16 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 82 | 133 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.2E-13 | 84 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.25E-13 | 84 | 133 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-13 | 84 | 157 | No hit | No description |
CDD | cd14702 | 5.80E-20 | 85 | 136 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLPGELTGIQ YLAPENPIPF SANLGLMQQT SMPTFHYNRL ISNFYSNPSF PQPVQDFTQQ 60 SSSLSNNSTS DEAEENQLSI IDERKQRRMI SNRESARRSR MRKQKHLDEL WSQVVRLRTE 120 NHNLIDKLNH VSECHDRVLQ ENARLKEEAS DLRQMLTDLQ IGSPFTASAL RDLEDVPCNT 180 AHLRAESSNQ SISSSVDLLH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 103 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30138.m003866 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514552.1 | 1e-146 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 1e-40 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | B9RLD3 | 1e-145 | B9RLD3_RICCO; Ocs element-binding factor, putative | ||||
STRING | XP_002514552.1 | 1e-146 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 1e-45 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
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Phytozome | 30138.m003866 |
Entrez Gene | 8264628 |
Publications ? help Back to Top | |||
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