PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30137.m000436
Common NameLOC8263076, RCOM_1463020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 327aa    MW: 37057.1 Da    PI: 9.6058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30137.m000436genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.6e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ 
    30137.m000436 18 RGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 63
                     899*****************************.************96 PP
2Myb_DNA-binding56.37.1e-1870114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
    30137.m000436  70 KKPFTEEEEERLLKAHQIQGNR-WASIARLFP-GRTDNAVKNHYHVV 114
                      689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.591368IPR017930Myb domain
SuperFamilySSF466892.66E-2916111IPR009057Homeodomain-like
SMARTSM007171.7E-151766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-271971IPR009057Homeodomain-like
CDDcd001678.58E-142162No hitNo description
PfamPF139211.2E-182181No hitNo description
SMARTSM007171.7E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129419.13469119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2072117IPR009057Homeodomain-like
CDDcd001673.72E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MENGRGSSSS DSGKSCHRGH WRPAEDEKLR QLVDQYGPQN WNFIAEHLQG RSGKSCRLRW  60
YNQLDPNINK KPFTEEEEER LLKAHQIQGN RWASIARLFP GRTDNAVKNH YHVVMARRKR  120
ERLSLIYGKR SLQVLPTEPN KNSTTASAGN DFERCYRPQL LDYHLYGQSK LGFQSNAIVM  180
KGNLSMSSSS SPSWTFNSAS TITNESLSID LFDGKRKDYI NSSSSSSYIK EGLSHGFNES  240
LRCNYHRPSS SIYGGYHNIF GPQISNSDKK ELLTDGYRSK IRTQLEGIND DSTTLRNLPM  300
TSQQEQGDGA IKQKDVSFID FLGVGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-34181187107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30137.m000436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707831e-122AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526637.10.0transcription factor MYB54
TrEMBLB9SKW80.0B9SKW8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002526637.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.17e-70myb domain protein 69