PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30135.m000188
Common NameLOC8273513, RCOM_1456530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 713aa    MW: 78625.3 Da    PI: 6.892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30135.m000188genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-203388156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++ +++t++q++ Le++F+++++p++++r +L+++lgLt+rq+k+WFqNrR+++k
  30135.m000188 33 KKRYHRHTANQVQKLESMFKECPHPDEKQRLQLSRELGLTQRQIKFWFQNRRTQMK 88
                   678899***********************************************998 PP
2START181.16.3e-572294502206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    +a  a++el+++ + +ep+W+kss    + +  d++ ++f++  +       ++ea+r+sgvv+m++  lv  ++d + +W e ++      + le
  30135.m000188 229 IAANAMDELLRLLQTNEPLWMKSStdyrDVLHLDTYQSIFPRPISrlknpnVRIEASRDSGVVIMNSLALVDMFMDAN-KWVELFPtivsISKPLE 323
                    67889*******************9999888999999999887779999999**************************.*******99978899** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    vissg      g l+lm+ elq+lsplvp R+f+++Ry++q ++g w+iv vS d +q+ ++     R+++lpSg+li++++ng+skvtwvehv++
  30135.m000188 324 VISSGmmgshsGSLHLMYEELQVLSPLVPtREFYILRYCQQIEQGLWAIVNVSYDIQQFSSQ----CRSHRLPSGCLIQDMPNGYSKVTWVEHVEV 415
                    ***********************************************************886....****************************** PP

                    -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                    +++ p h l+r l++sg+a+ga +w+atlqr ce+
  30135.m000188 416 EDKNPtHRLYRDLIHSGMAFGAERWLATLQRMCER 450
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-211390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-231884IPR009057Homeodomain-like
PROSITE profilePS5007118.4153090IPR001356Homeobox domain
SMARTSM003892.8E-193194IPR001356Homeobox domain
CDDcd000861.58E-193291No hitNo description
PfamPF000462.1E-173388IPR001356Homeobox domain
PRINTSPR000319.4E-56170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000319.4E-57086IPR000047Helix-turn-helix motif
PROSITE profilePS5084853.419219453IPR002913START domain
SuperFamilySSF559615.26E-38220451No hitNo description
CDDcd088755.04E-116223449No hitNo description
SMARTSM002341.3E-50228450IPR002913START domain
PfamPF018521.8E-49229450IPR002913START domain
Gene3DG3DSA:3.30.530.204.1E-7239264IPR023393START-like domain
Gene3DG3DSA:3.30.530.204.1E-7337448IPR023393START-like domain
SuperFamilySSF559611.26E-23471705No hitNo description
Gene3DG3DSA:3.30.530.202.0E-4478557IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEYGSLGGGG GSSGAGGSGS GGDHDPSDLQ RRKKRYHRHT ANQVQKLESM FKECPHPDEK  60
QRLQLSRELG LTQRQIKFWF QNRRTQMKAQ HERADNCALR AENDKIRCEN IAIREALKNV  120
ICPSCGGPPV TEDSYFDEHK LRMENSQLKE ELDRVSSIAA KYIGRPISHL PPVQPIHISS  180
LDLSMGSFGG QGIGGPSLDL DLDLIPSTST LPFHPLGISD MDKSLMSDIA ANAMDELLRL  240
LQTNEPLWMK SSTDYRDVLH LDTYQSIFPR PISRLKNPNV RIEASRDSGV VIMNSLALVD  300
MFMDANKWVE LFPTIVSISK PLEVISSGMM GSHSGSLHLM YEELQVLSPL VPTREFYILR  360
YCQQIEQGLW AIVNVSYDIQ QFSSQCRSHR LPSGCLIQDM PNGYSKVTWV EHVEVEDKNP  420
THRLYRDLIH SGMAFGAERW LATLQRMCER FACLMVSGNL TRDLGGVIPS PDGKRSMMKL  480
AQRMANSFCS SISTSNSHRW TAISGSNEVG VRVHKSTDPG QPNGVVLNAA TTFWLPVSPQ  540
NVFNFFKDER TRAQWDVLSS GNAVQEVAHI ANGSHPGNCI SVLRAFNSGQ NNMLILQESC  600
IDSSGSLVVY CPVDLPAINI AMSGEDPSYI PLLPSGFTIC PDGRPDHGDG ASTSSNAHGS  660
MCRSSGSLIT VSFQILVSSL PSAKLNMESV TTVNNLINTT VQQIKAAMNC PNS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30135.m000188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527933.10.0homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLB9SPL40.0B9SPL4_RICCO; Homeobox protein, putative
STRINGXP_002527933.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]