PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30131.m007187

Common Name

LOC8270873, RCOM_1452410

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

SRS

Protein Properties

Length: 280aa MW: 30282.5 Da PI: 8.5497

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30131.m007187	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.2	5.4e-57	76	237	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaesk 97 + C+dCGn+akk+C+++RCRtCCksrg+dCathvkstWv+aa+rrer+ ++ s+ +kr+re+ ++++++ls++ ++ ++ 30131.m007187 76 SSRVCRDCGNRAKKECEFRRCRTCCKSRGYDCATHVKSTWVSAARRRERHGGDGGGGGGSSGSSsgGGGGTKRPRENVTATSNSLSTS-NNNVAAS 170 5678*******************************************887776655544444346778888888744443333333.3344444 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++t s lP++v+++avfrc+rv++++ ge e++Yq+ v+i+Gh+fkG+LydqG+++ 30131.m007187 171 FSFDTGSnyqdasfkqcLPSQVRAPAVFRCIRVTAINGGEPEVGYQAMVNISGHLFKGFLYDQGIDK 237 45555557888999999*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-54	78	236	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-26	79	121	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:2.30.27.10	8.6E-4	107	162	No hit	No description
TIGRFAMs	TIGR01624	1.5E-24	188	235	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLGLHNILLI APPPSSSAPF HQQQITNIND QCNISNNQDA WTALKRYQQE SCFAKKDALS 60 IVDHEDNIEN DNSNSSSRVC RDCGNRAKKE CEFRRCRTCC KSRGYDCATH VKSTWVSAAR 120 RRERHGGDGG GGGGSSGSSS GGGGGTKRPR ENVTATSNSL STSNNNVAAS FSFDTGSNYQ 180 DASFKQCLPS QVRAPAVFRC IRVTAINGGE PEVGYQAMVN ISGHLFKGFL YDQGIDKKNL 240 FPCISKMPSS ERNRDSTSPI LDPPAAYTAS GSQRLLQGNE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30131.m007187

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002513050.1	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X5
Swissprot	Q94CK9	3e-51	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	B9RG98	0.0	B9RG98_RICCO; Transcription factor, putative
STRING	XP_002513050.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-51	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	30131.m007187
Entrez Gene	8270873

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]