PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007163
Common NameLOC8270850, RCOM_1451970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 463aa    MW: 51139.1 Da    PI: 5.717
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007163genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09177218445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  30131.m007163 177 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 218
                    5888*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-8174237IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415176220IPR004827Basic-leucine zipper domain
CDDcd147083.39E-22178230No hitNo description
SuperFamilySSF579596.88E-7178221No hitNo description
PfamPF001709.0E-7178218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7179222No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141442.1E-33260335IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSKVGVEDE KEANGMPSFE LPISNALGIE GSTIHSYRVS DFGAFDQSVA FRLEDAVDLS  60
TNTVFNSAKA NNQADTSDPL HIGSFDKLTA SFNINPSPAQ LESQRLPLEK GQQLNIIALS  120
SGNTENWEES NMADGSPRTD LSTDGDTDDK NQRFDRGLST AIAASDSSDR SKDKMDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQAHSMSG  240
NGAMAFDVEY ARWLEEQNRQ INELRSAVNS HAGDAELRII IDGVMAHYDE IFRLKSNAAK  300
ADVFHLLSGM WKTPAERCFL WLGGFRSSEL LKLLVNQLEP LTEQQLVGLG NLQQSSQQAE  360
DALSQGMEAL QQSLAETLSS GSLGSSGSSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR  420
QQTLQQMHRI LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513027.10.0transcription factor TGA6
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLB9RG750.0B9RG75_RICCO; Transcription factor HBP-1b(C1), putative
STRINGXP_002513027.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-160TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]