PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007143
Common NameLOC8284385, RCOM_1450970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BBR-BPC
Protein Properties Length: 314aa    MW: 34905.5 Da    PI: 9.7729
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007143genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind348.81.2e-10613141301
      GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                    md++g+++  r k  yy+                p+++l   +++++m+++aerda+i+ern+al+ekk+a+ +rd+a++qr+kalaer+kal+er
  30131.m007143   1 MDESGQHHngRYKIdYYKaanspwsmgsphpikePSNALV--MNKKIMAILAERDAAIQERNMALAEKKEALVARDEALQQREKALAERDKALMER 94 
                    7888776557888779999999999999998854446666..9***************************************************** PP

      GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk...k 170
                    dn+l+a++++en+  ++ p+g +  +g+k i +    + +++++ a +  e+++++a+pi++ a e+ + +++k+++++k+   k +k++kk    
  30131.m007143  95 DNALAAIQYRENA--MNFPFGNGNQRGSKRIPHPVY-NSNEVAE-ALDGGEMHITDAFPITTVAAESGKPRQTKRSKENKSVSMKATKSAKKgnkV 186
                    ************8..5678899999******97766.4555555.55669************9999999888887666665544444444440004 PP

      GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                    +e+ +++  +++  ++ k e++ +d +ln v++D+st+PvPvCsCtG+++qCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f+
  30131.m007143 187 GEDLNRQGPSDG--KKFKVEWDGQD-GLNLVNFDDSTMPVPVCSCTGVPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFT 279
                    444444444333..88********9.9********************************************************************* PP

      GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    klL++La+eG+dls p+DLkd+WA+HGtn+++ti+
  30131.m007143 280 KLLSRLASEGHDLSLPLDLKDYWARHGTNRYITIK 314
                    **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-1581314IPR010409GAGA-binding transcriptional activator
PfamPF062175.9E-981314IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDESGQHHNG RYKIDYYKAA NSPWSMGSPH PIKEPSNALV MNKKIMAILA ERDAAIQERN  60
MALAEKKEAL VARDEALQQR EKALAERDKA LMERDNALAA IQYRENAMNF PFGNGNQRGS  120
KRIPHPVYNS NEVAEALDGG EMHITDAFPI TTVAAESGKP RQTKRSKENK SVSMKATKSA  180
KKGNKVGEDL NRQGPSDGKK FKVEWDGQDG LNLVNFDDST MPVPVCSCTG VPHQCYKWGN  240
GGWQSSCCTT TLSSYPLPQM PNKRHARVGG RKMSGSVFTK LLSRLASEGH DLSLPLDLKD  300
YWARHGTNRY ITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570923.10.0protein BASIC PENTACYSTEINE4
RefseqXP_015570925.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-134BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLB9RG560.0B9RG56_RICCO; Uncharacterized protein
STRINGXP_002513008.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-136basic pentacysteine 4