PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30131.m007131

Common Name

LOC8284373, RCOM_1450450

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

DBB

Protein Properties

Length: 212aa MW: 23685.8 Da PI: 6.0834

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30131.m007131	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H 30131.m007131 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************998 PP
2	zf-B_box	27.8	5.3e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e++++ ++Ce +++ lC +C + H g H 30131.m007131 52 EVPRCDICENEPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.21	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	5.0E-9	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.33E-6	3	45	No hit	No description
Pfam	PF00643	4.6E-6	3	34	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	2.98E-5	50	86	No hit	No description
SMART	SM00336	2.2E-11	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.3	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.1E-7	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	7.28E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0070370	Biological Process	cellular heat acclimation
GO:0071483	Biological Process	cellular response to blue light
GO:0005634	Cellular Component	nucleus
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SEVPRCDICE 60 NEPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LDELGQQALD 120 QNEVRRDQIQ PHKLTMGENK QNHRTSPVPM MENNSNIDGK IDNKLIDLNA RPQRIHGQNS 180 TNQEQGMDVM SGSNHECASI VPVGSFNREP EK

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30131.m007131

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015570678.1	1e-158	B-box zinc finger protein 19 isoform X2
Swissprot	C0SVM5	3e-86	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	B9RHD7	1e-156	B9RHD7_RICCO; Salt-tolerance protein, putative
STRING	XP_002512996.1	1e-157	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-88	DBB family protein

Link Out ? help Back to Top
Phytozome	30131.m007131
Entrez Gene	8284373