PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m007102 | ||||||||
Common Name | LOC8284344, RCOM_1449160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | SRS | ||||||||
Protein Properties | Length: 199aa MW: 22113.9 Da PI: 8.3994 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 176.8 | 9.7e-55 | 9 | 138 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g+++CqdCGnqakkdC+++RCRtCCks+gf+C+thvkstWvpa++r++r q+ ++ + ++++ +++ +++++ + ++ 30131.m007102 9 GGSRCQDCGNQAKKDCVYMRCRTCCKSKGFHCQTHVKSTWVPAYRRQQRLQNVSSIQLQQQH--PQDQLHNPKR-----------LR-------EN 84 7789*********************************************8888776544422..1222222221...........11.......22 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 t+++P+ev+s a frc+rvss+d+g++++aYqt++sigGhvfkGiLydqG+ 30131.m007102 85 PATENFPAEVNSLATFRCLRVSSIDEGDDQFAYQTSMSIGGHVFKGILYDQGPT 138 34678***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.2E-55 | 10 | 137 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.5E-29 | 13 | 54 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.1E-25 | 90 | 137 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MMMRQGGLGG SRCQDCGNQA KKDCVYMRCR TCCKSKGFHC QTHVKSTWVP AYRRQQRLQN 60 VSSIQLQQQH PQDQLHNPKR LRENPATENF PAEVNSLATF RCLRVSSIDE GDDQFAYQTS 120 MSIGGHVFKG ILYDQGPTYT IGESSTTQIQ EPNLANAAAL TSTTLAPTSS VDADSLPPSY 180 PFPFNAFMSG TQLFLHPKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m007102 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512967.1 | 1e-150 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 4e-58 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | B9RHA8 | 1e-148 | B9RHA8_RICCO; Uncharacterized protein | ||||
STRING | XP_002512967.1 | 1e-149 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 3e-54 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | 30131.m007102 |
Entrez Gene | 8284344 |
Publications ? help Back to Top | |||
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