PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m007045 | ||||||||
Common Name | LOC8285322, RCOM_1447390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49643.6 Da PI: 6.6989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 5.9e-10 | 244 | 291 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 30131.m007045 244 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 291 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-17 | 238 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-10 | 238 | 295 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 240 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 240 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 244 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 246 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MNRALLPEML HCTDLTVLER QRARLKWQQE QQHLQLEQHQ HQHHQGENYF LGDLSGVFQL 60 QQQQQQQQGF QGDLGEVVIR SVKPDPGFLD NGCWSNTSST DLVGYGPCGF GNMNFAISRT 120 SSCPPTVADA GPVLVKGRES VVSEKLTCGV GSESTKKRKV DKVQNNTKVV AEDDNCRDKR 180 IKVCAEEGES KMITEKNNNN KSSSSKNSNK ENSAETSKDN SKVTEVQKPD YIHVRARRGQ 240 ATDSHSLAER VRREKISERM KYLQDLVPGC NKITGKAGML DEIINYVQSL QRQVEFLSMK 300 LAAVNPRLDF NIDNLIAKET FPPCPTNFPA IGLSSDMTNP AYLQFNPVQQ QQQQQQQQQL 360 VTCCGLDMGI NNPDMGIRRT ISAPVSIPES YIDSSCFNQI QSSSTWDADL QNLYNVAFDQ 420 GRSTSFPTQP FTGAIDAGNL KMEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m007045 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512912.1 | 0.0 | transcription factor bHLH63 | ||||
Swissprot | Q8GY61 | 6e-66 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | B9RH53 | 0.0 | B9RH53_RICCO; Uncharacterized protein | ||||
STRING | XP_002512912.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 3e-61 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | 30131.m007045 |
Entrez Gene | 8285322 |