PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007029
Common NameLOC8285306, RCOM_1447030
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 686aa    MW: 75615.2 Da    PI: 6.0156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007029genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.86e-1363216851374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                    lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla   +++ +++  +p ++ ++ns e l+++++ ++++P++kf+
  30131.m007029 321 LVHLLLACAEAVAKEDYMLARKYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtLTTQPSNTApKPYSSYPSNSMEILKIYQIVYQACPYIKFA 416
                    68*****************************************************43344444443566666778********************* PP

           GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs      e+++etg+ L+++A++l+vpfef++ va++ledl+
  30131.m007029 417 HFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----CIESVRETGRCLTELAHSLHVPFEFHP-VAEELEDLK 507
                    *******************************************************....***************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +++++ + gEalaVn+v +lh+++    +l+    ++L ++++  P++v++ve+ea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE
  30131.m007029 508 PHMFNRRVGEALAVNSVNRLHHVP--GNCLP----NLLAMIRDQAPNIVTIVEKEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSTQRAKVE 597
                    ***********************9..44555....5************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + ++++ei+n+vaceg er+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  30131.m007029 598 QYIFAPEIRNIVACEGPERTERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 685
                    ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.814295665IPR005202Transcription factor GRAS
PfamPF035142.1E-133321685IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MINSLSGCMG SVKSMSNSSC TKTHQPTSAN GSSSVFESKR TTLSSDLEHT SLTPPSLSFP  60
AVKFELDGDV EVQSPDSSLW ETFFSDHSDS DFMILSPVRN LPSPQTSTCN YNHVHAMQGQ  120
SFSGCSPPRH LYQLGSFSSS HKGKGQSPLH RVFNSPNNQY MQIESLSSLP GIEDFLDDYQ  180
RDGLVGGYQP TRLSSGTGNS ASSELFDMQT AAGPPLLDCL SMPSSSVFGG SVSETSPSGS  240
QLAQDRDIYH MESLRNAPPL SQQLQQEQQE NQRQPPPSTT PPPPPPVATT PPERQQQNLN  300
PSLMVPLPIG PEQEQDSGLQ LVHLLLACAE AVAKEDYMLA RKYLHHLNRV VTPLGDSMQR  360
VASCFTEALS ARLAATLTTQ PSNTAPKPYS SYPSNSMEIL KIYQIVYQAC PYIKFAHFTA  420
NQAIFEAFEA EERVHVIDLD ILQGYQWPAF MQALAARPGG APFLRITGVG SCIESVRETG  480
RCLTELAHSL HVPFEFHPVA EELEDLKPHM FNRRVGEALA VNSVNRLHHV PGNCLPNLLA  540
MIRDQAPNIV TIVEKEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPPDS TQRAKVEQYI  600
FAPEIRNIVA CEGPERTERH ERLEKWRKLM EGKGFKGVPL SANAVTQSKI LLGLYSCDGY  660
RLTEDKGCLL LGWQDRAILA ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1013096846377Protein SCARECROW
5b3h_D1e-1013096846377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007029
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512896.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9RH370.0B9RH37_RICCO; DELLA protein GAI1, putative
STRINGXP_002512896.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]