PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007007
Common NameRCOM_1446000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 426aa    MW: 47767.3 Da    PI: 4.8235
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007007genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-071647435
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                   r C+ ++++ ++l+C+ ++  lC  C ++ H+
  30131.m007007 16 RLCDFCNSEAAILYCRADSAKLCLFCDQQVHS 47
                   68***************************995 PP
2CCT64.62.9e-22380424145
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                    R +a+lRY eK+ktR+++K+irYesRKa+A++R RvKGrFvk++e
  30131.m007007 380 RGNAMLRYMEKKKTRRYDKHIRYESRKARADTRERVKGRFVKASE 424
                    7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.9E-101360IPR000315B-box-type zinc finger
CDDcd000211.61E-71648No hitNo description
PfamPF006436.1E-61655IPR000315B-box-type zinc finger
PROSITE profilePS501199.2861755IPR000315B-box-type zinc finger
PROSITE profilePS5101714.565380422IPR010402CCT domain
PfamPF062032.8E-16380422IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEEYSDSAPR NSLFVRLCDF CNSEAAILYC RADSAKLCLF CDQQVHSANA LSLNHFRSLN  60
CDKCGAEPAS VQCSVINDNN NNDLVLCQDC DFDCSVSLSL LKRAHINGFM GCPNAVELGE  120
ILGFDLKKTK LFASSDSGSD LYDQEMDNMQ DLLVPSGNSS RNCRQEMYKQ LLELGKRERV  180
KVNGDGDGEE LRPETPPSRC GQQGNLVNLQ MKNGNEEEFH HQERPFASML MLPNLEDVRE  240
SDGAADGVLL WDCNPTYQAA QVWDLDLGKT RDCAEPGEEE ANYDATDPGF TFNNHRISKD  300
SAFNIIKVCS KQQVLQSTME TGGGKDTLLV EQSSDSLLAE AKSNNSPRHV EVVEKSHLAW  360
VGTDDMETSK ADVELFAQNR GNAMLRYMEK KKTRRYDKHI RYESRKARAD TRERVKGRFV  420
KASENC
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570942.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLB9RH150.0B9RH15_RICCO; Transcription factor, putative
STRINGXP_002512874.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.29e-67B-box type zinc finger protein with CCT domain