PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m006951
Common NameLOC8273074, RCOM_1444050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 270aa    MW: 30385.9 Da    PI: 4.7107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m006951genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-192876355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  30131.m006951 28 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 76
                   56******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-302783No hitNo description
SMARTSM003801.2E-342790IPR001471AP2/ERF domain
PROSITE profilePS5103220.7842784IPR001471AP2/ERF domain
PRINTSPR003673.3E-82839IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-212885IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-292884IPR001471AP2/ERF domain
PfamPF008475.1E-123076IPR001471AP2/ERF domain
PRINTSPR003673.3E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNPSPSKSKK KQAQQQSQQQ EGSNGGRFLG VRRRPWGRYA AEIRDPSTKE RHWLGTFDTA  60
EEAALAYDRA ARSMRGPRAR TNFVYSDMPA GSSVTSIISP DDQQQQMLSL QQQQQQQEQQ  120
QSIFVLPQSH DQPDSTPLFF NDFSSQCHYS EEFSSSMANV ADSTWGYSTT YQHHHQDQER  180
PIITNNELPP FPSDISSLSS SAQSSFQYNG SGYDQTSQDF LGFEDAMTNG FDFGRFDSGE  240
YVHSPMFSRM PPVSDTVPDG LDLGSSGYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-202383162ATERF1
3gcc_A9e-202383162ATERF1
5wx9_A2e-191683371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m006951
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512809.10.0ethylene-responsive transcription factor LEP
TrEMBLB9RGV00.0B9RGV0_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002512809.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-40ERF family protein