PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m006896
Common NameLOC8280276, RCOM_1442620, RcWRI3
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 330aa    MW: 36853.2 Da    PI: 6.179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m006896genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.7e-0850852255
            AP2 22 pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++e ++ k ++++lg ++ +e Aa a++ a++k++g
  30131.m006896 50 WNEsQNkKGRQVYLGAYDDEEAAAHAYDLAALKYWG 85
                   434433355*************************98 PP
2AP251.42.7e-16128179155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  30131.m006896 128 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 179
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.2243393IPR001471AP2/ERF domain
SMARTSM003808.5E-83899IPR001471AP2/ERF domain
PfamPF008471.3E-45085IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-115494IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-115595IPR016177DNA-binding domain
CDDcd000185.88E-24128189No hitNo description
SuperFamilySSF541719.15E-18128189IPR016177DNA-binding domain
PfamPF008475.0E-12128179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-18129188IPR001471AP2/ERF domain
SMARTSM003801.2E-24129193IPR001471AP2/ERF domain
PROSITE profilePS5103218.334129187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAKISQQRQR NNSNNTNTSA KTGTNPSSTK AKRTRKTVPR DXXLWDKNCW NESQNKKGRQ  60
VYLGAYDDEE AAAHAYDLAA LKYWGQDTIL NFPLSTYEEE LKEMEGQSKE EYIGSLRRKS  120
SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY DMAAIEYRGL  180
NAVTNFDLSR YIKWLRPNNP QENPTSDANP MPNPTQDLGL TFTAHHQSST ATAETTMPLP  240
TCGGGGGGSA SSALGLLLQS TKFKEMLERT SANDCPMTPP ESEPPRRSFP DDIQTFFDCQ  300
DTGSFTEGDD IIFGELDAFA SPIFHCELND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m006896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741610.0AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512756.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-108AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9RGP70.0B9RGP7_RICCO; AP2-type transcription factor
STRINGXP_002512756.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-88ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]