PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m009052
Common NameLOC8285672, RCOM_1437970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 297aa    MW: 33798.1 Da    PI: 7.0024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m009052genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09175221555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                    h+ +Er RR++i  ++  L++l+P +      K   Ka+iL + ++++ sLq
  30128.m009052 175 HSLAERVRRKKISVRMKLLQSLVPGC-----DKlTGKAQILDEIIRHVLSLQ 221
                    899**********************9.....46499***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-14168231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-8168225No hitNo description
PROSITE profilePS5088814.138170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAAFSHPASF VLDPFFEPDR FSTIITTTGP CFSPIFPREH VQEISLHADQ FHEATTHVVD  60
NIEVPSIFIT ESPVNATQKL SSPSWAVNDI ERATDRLYQD ALLINPVQPN RKHQDFKEEK  120
ESKGEKRCTQ NCDFGKPERK RPEPRARKEK KVAKEHPLTG YVHVRARRGE ATDPHSLAER  180
VRRKKISVRM KLLQSLVPGC DKLTGKAQIL DEIIRHVLSL QNQVEFLAAK FTSENGIANE  240
VNYEMNTLVA KELYNSELQE SSSAQLISFM EATSASMLRH HHQEATNATT QAFDYDF
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m009052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512649.10.0transcription factor bHLH62
TrEMBLB9RFY00.0B9RFY0_RICCO; Uncharacterized protein
STRINGXP_002512649.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-36bHLH family protein