PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008988
Common NameRCOM_1436840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 758aa    MW: 80868.2 Da    PI: 6.2384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008988genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16469515455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  30128.m008988 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-17461519No hitNo description
Gene3DG3DSA:4.10.280.102.9E-20462523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-20462525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPLSELICRL SKGKFDSSSQ EKNTTCSTDL SAGPENDFLE LVWENGQIQS SRARKISNGV  60
QSQTSKFRDK DISIGIGNGN NTKMGRFGAM DFGLDEVPMS VPSVEMGLNQ EDDMVPWLND  120
PIDDSLQQDY CHEFLAELSG VTVNEHAQNS FASSDKKCNG NQSVRDSHTA SVHNGLSLEQ  180
GHMPRVSSGR DGDATRSRTT ASQLYSSSVQ QCQASFPHFR SRISANNAES TNNSTHVASS  240
GDPIRGSPSG GGFPSIKAQK QVPVLATTNS SLMNFSHFSR PVALAKANFE NIGTRAGSGI  300
SSIERIGSQD KGSIASSSNP AESMLNETFS GLKKETSSRC RPVMVSSKVD DKPLDHRPAE  360
EPLLAKQPEA MENDCKNDKN HCQFAASATK GLADGEKTAE PIVASSSVCS GNSMERVSDE  420
PMQNLKRKHR ETEESEGPSE DVEEESVGGK KAAPARGGTG SKRSRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP SMMLPPGVPH  540
MHVAHMSQFS PMGVGMGFGM GMPDMIGGSS GCSMIQVPPM HGAHFPSPPM SGPSALHGMG  600
GSNLPMFGLS SQGHPMPYLC PPVMPMSGGP LLRTTLGLNA GGVAGPTDNL DSAPGSSSKD  660
SIRNVNSHSI QNGGANSSMN QTSTQCQVTN ERFEQPALVQ SSAQASEVDS GALKSADEND  720
NAPSEANGKH ALATIALLII IIKRGMGMGW TLNEVDSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570501.10.0transcription factor PIF3 isoform X1
RefseqXP_015570502.10.0transcription factor PIF3 isoform X2
TrEMBLB9RFR80.0B9RFR8_RICCO; Uncharacterized protein
STRINGXP_002512587.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-75phytochrome interacting factor 3