PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30128.m008923

Common Name

LOC8269835, RCOM_1435500

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 207aa MW: 22844.1 Da PI: 11.6085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30128.m008923	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.5e-05	134	180	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r rE +R + ++ L +l+P + +K s + iLe+A +YI L 30128.m008923 134 RREAVRENKRLPAVDKKVRVLSRLVPGC-----RKASFSNILEEASDYIAAL 180 445889999999999999*******9.....8*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.093	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-8	133	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-7	134	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MASFMESNSD TSQQFDHQRK KRRKLTHDQT SSSNSNNNQI IAQTATRWRT QPEQQIYSSK 60 LLQALRRSRR TASAADDAAA VSPAAKGRQI RDTADKVLAV AAKGTTRWSR AILAGKLRLK 120 VKKVKKVKVT GERRREAVRE NKRLPAVDKK VRVLSRLVPG CRKASFSNIL EEASDYIAAL 180 EMQVKAMTAL TEILAAGGGG SPVDRAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	23	KKRRK
2	117	126	RLKVKKVKKV

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269\|PubMed:20023194}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30128.m008923

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002512524.1	1e-149	transcription factor bHLH149
Swissprot	O80482	1e-39	BH149_ARATH; Transcription factor bHLH149
TrEMBL	B9RFK5	1e-148	B9RFK5_RICCO; Transcription factor, putative
STRING	XP_002512524.1	1e-149	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1387	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	3e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	30128.m008923
Entrez Gene	8269835

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]