PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30128.m008730 | ||||||||
Common Name | RCOM_1430450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 161aa MW: 18684.9 Da PI: 10.9156 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++++++G g+W +++ + g++R++k+c++rw++yl 30128.m008730 34 KGSWTPEEDDLLRKCIQKYGEGRWCLVPTRAGLRRCRKSCRLRWLNYL 81 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8e-16 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w++ 30128.m008730 87 RGAFTEDEVDLLIRLHKLLGNR-WTLIACRLP-GRTANDIKNFWNTN 131 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.359 | 29 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 30 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.91E-28 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-16 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-17 | 34 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.74E-11 | 36 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 85 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.784 | 86 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 87 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-10 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MLGWRQAISK LTSLKVASDT NNVCRSLWSS KVRKGSWTPE EDDLLRKCIQ KYGEGRWCLV 60 PTRAGLRRCR KSCRLRWLNY LKPDIKRGAF TEDEVDLLIR LHKLLGNRWT LIACRLPGRT 120 ANDIKNFWNT NLGKKKIVSC KKGDNVKEKT QKTTKIDVIK P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-26 | 34 | 135 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-25 | 10 | 135 | 30 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-25 | 10 | 135 | 30 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-26 | 34 | 135 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-26 | 34 | 135 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30128.m008730 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015570345.1 | 1e-112 | transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 7e-55 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | B9RF16 | 1e-112 | B9RF16_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002512335.1 | 1e-112 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-57 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | 30128.m008730 |
Publications ? help Back to Top | |||
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