PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008571
Common NameLOC8285706, RCOM_1438510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 278aa    MW: 30436.1 Da    PI: 4.6119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008571genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-193583355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  30128.m008571 35 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 83
                   67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5873491IPR001471AP2/ERF domain
SMARTSM003801.4E-333497IPR001471AP2/ERF domain
CDDcd000184.22E-293490No hitNo description
SuperFamilySSF541716.02E-213592IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-283591IPR001471AP2/ERF domain
PRINTSPR003673.5E-83546IPR001471AP2/ERF domain
PfamPF008479.4E-123783IPR001471AP2/ERF domain
PRINTSPR003673.5E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDFTSSNSNS PSPSKTKRKQ QQQNDQSDQH QQVRFLGVRR RPWGRYAAEI RDPSTKERHW  60
LGTFDTAEEA ALAYDRAARS MRGFKARTNF VYSDMPGGSS VTSIISPDES QHHISALFAP  120
PCQYSQNDTN QQLLFTAQDC TFNESSFRYA NNSGFVTGGG EGWIPGAVAA GSFQPVTASM  180
AAGDGSNHCS TNDIELPPLP PDFTTSSCYG SDLGHELWND TALFGFSQEP TNGPDPTSTG  240
TFDPDEFLQH SPLFGRLPSV SDTMMDSFDL GSSSAFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-183590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512683.10.0ethylene-responsive transcription factor LEP isoform X1
SwissprotQ9FZ902e-52ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLB9RG140.0B9RG14_RICCO; DNA binding protein, putative
STRINGXP_002512683.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]