PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30125.m001257
Common NameLOC8270761, RCOM_1426110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 319aa    MW: 35952.4 Da    PI: 6.839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30125.m001257genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
    30125.m001257 13 RGLWSPEEDEKLGKYITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding52.98.5e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
    30125.m001257  66 RGTFSAQEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.619860IPR017930Myb domain
SuperFamilySSF466896.53E-2910107IPR009057Homeodomain-like
SMARTSM007174.2E-111262IPR001005SANT/Myb domain
PfamPF002492.1E-141360IPR001005SANT/Myb domain
CDDcd001676.04E-101660No hitNo description
PROSITE profilePS5129425.85361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2564116IPR009057Homeodomain-like
SMARTSM007177.0E-1665113IPR001005SANT/Myb domain
PfamPF002493.7E-1566109IPR001005SANT/Myb domain
CDDcd001679.49E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGHRCCSKQK VKRGLWSPEE DEKLGKYITT YGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS AQEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPRTHNLIPS HQRANIKKVV SNNSQSHQSQ PHQQTKFSII TAKSKMTDTS MQITDPPILT  180
LPSLNNIQQP SSASIFSSND QNLHILSSTT INDSTIFPPP SSSMNPTGFG LFDDNCFWST  240
NNCTISEPFE VPTVEVLQAQ ELQLNQAYDE VDEANKGVED MDASFDSSSF GFEFVESSML  300
SNSVLCHELN VMDDLAWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30125.m001257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346532e-41KM034653.1 Jatropha curcas clone JcMYB033 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516417.10.0transcription repressor MYB6
TrEMBLB9RRP80.0B9RRP8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002516417.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-88myb domain protein 67