PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30122.m000341
Common NameLOC8282961, RCOM_1418130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Nin-like
Protein Properties Length: 907aa    MW: 102444 Da    PI: 7.6372
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30122.m000341genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.64.4e-27588638252
         RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    e++isle+l+++F+++++dAAk++gvc+T+LKriCR++GI RWP+Rkik++
  30122.m000341 588 EDSISLEVLQQHFAGTLQDAAKSIGVCPTTLKRICRKNGITRWPSRKIKKV 638
                    578**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.018577658IPR003035RWP-RK domain
PfamPF020421.9E-24591638IPR003035RWP-RK domain
SuperFamilySSF542772.75E-21803895No hitNo description
Gene3DG3DSA:3.10.20.2402.4E-20808889No hitNo description
PROSITE profilePS5174520.572809892IPR000270PB1 domain
SMARTSM006661.3E-19809892IPR000270PB1 domain
CDDcd064079.62E-34810891No hitNo description
PfamPF005644.0E-15810891IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MEELLYQECW LENSAEGFNM TQQSGNSISN IVYDPSRSVP SLRSSYPNIN TQHEQLYQEQ  60
ITGHRNFPSN TPLHYHKADE HPQDESESTT TTVVQSKRLP IIEGTEAGRG WPISNSRSSN  120
YSVKERIRQA LQYLEGYTKD KDVLIQVWMP IKRGGKNFLT TIDQPYFLKP GCKNLSCYRN  180
VAKTYDFPLE ENSQDSIGFP GRVFLEKLPD WSPDVRLFRE NEYPFRDHAR QYNICGCLAI  240
PVLGPSSGTC LGVIEVVTTA HHKISCRPEL EYICKALKEV DLKTSQDFCS PSVKVLNELY  300
EVAVPEISEI LQSVCKRFRL PLALTWAPCK RLGESGYDEH FPEKFASCIL TVDSACFLAD  360
KELSGFYKAC SEQYIFLGQG TVGKAFSKQK QCFSPDITCF TKTSYPLAHH ANIYNLQAAV  420
AFPLRSIYTG LFEFVLELFL PQRCRDPEEQ SRMWDLLSIS IQQSCRSLQV ILDKEIVPTE  480
ETDKKSGSSS WIACTMGAQK NGNGCCVSWD CKENEPKEEF KVITNWDGSD DQVELEHDLR  540
VFSELQQLQK ISPQPKSISI DDYGVSSSSG KRRASSRKAG EKKRISIEDS ISLEVLQQHF  600
AGTLQDAAKS IGVCPTTLKR ICRKNGITRW PSRKIKKVDH SLRKLQKVID SVQGNQGSIH  660
IGSFYSAFPQ LSSPKISINA PFSSTMKNRD NSKQFNPPPE RAASRSSHSS SCSKGSCSSM  720
CCSAQSHKHT TTINNLSSRS PLLAQNPNEV LQERSCSKVE LHALNQEELN IPVRSLVHKT  780
LSNFSSMDTP PPCSFLTNKI GQSLQEAGAF RVKAIFAEEK VRLCLQPNWK LWELRQEIGK  840
RFNLDDFTGI DLKYLDDDGE WVRLNCDADL EECKDIYKYC KSKAVIISLH QASQPILASS  900
LCWRGQF
Cis-element ? help Back to Top
SourceLink
PlantRegMap30122.m000341
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525797.20.0protein NLP2
TrEMBLB9SIH80.0B9SIH8_RICCO; Transcription factor, putative
STRINGXP_002525797.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein