PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30115.m001235
Common NameRCOM_1409990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 406aa    MW: 44827.1 Da    PI: 6.1216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30115.m001235genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16165211455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  30115.m001235 165 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 211
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.87E-18157215No hitNo description
SuperFamilySSF474595.5E-20158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGDINPMYNR CSSIYSTGVV HDHDHHHRSS DDFSVFLNQI LLRSSSTSLS STMTTTTTLS  60
FAAAAPVSMQ LQESCYPHHH RSCVSTVQFG DGVNVGYFSG NVRGSSSTAA NASSLSIGGG  120
GASENETDHE CDCESEEGLE ALIEEVQTKA APPRSSSKRS RAAEVHNLSE KRRRSRINEK  180
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSLR NGIGLHPMCL PGVLQPTQFS  240
QFSMGFAEEN GSQHTNVAGS LPLNQEKPEQ TVFDIPSQCG VSNQLSVPNM SNVIHSQTSF  300
GMESSVRAHF GPFPLQTSSE MKYGHLTCFQ LKEICREDVL PHQQLNAEHS ERIPLGDYAM  360
SHCFCYMCAY KSYFILGLCI SITRMQTGRS APDDDEIKIE RQEILD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30115.m001235
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577491.10.0transcription factor SPATULA isoform X1
TrEMBLB9SC940.0B9SC94_RICCO; Uncharacterized protein
STRINGXP_002523613.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-48bHLH family protein