PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30114.m000507
Common NameLOC8265761, RCOM_1404820, RcWRI2
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 327aa    MW: 37286.4 Da    PI: 6.5116
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30114.m000507genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.61.5e-081165255
            AP2  2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++k +r ++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  30114.m000507 11 KHKVIR-HRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDEEEAAAHAYDLAALKYWG 65
                   678887.99***********99998898888888********************98 PP
2AP251.42.7e-16108159155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  30114.m000507 108 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 159
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.121173IPR001471AP2/ERF domain
SMARTSM003804.3E-141179IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-121475IPR016177DNA-binding domain
PfamPF008474.5E-51465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-111474IPR001471AP2/ERF domain
PfamPF008474.9E-12108159IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18108169IPR016177DNA-binding domain
CDDcd000182.37E-24108169No hitNo description
PROSITE profilePS5103218.334109167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-18109168IPR001471AP2/ERF domain
SMARTSM003801.2E-24109173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMSNLIGTAH KHKVIRHRWT GRYEAHLWDK NCWNESQNKK GRQGAYDEEE AAAHAYDLAA  60
LKYWGRETIL NFPLSTYENE LREMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG  120
RWEARIGRVF GNKYLYLGTY ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNPN  180
DNIKNFNDQH HHPNPNPKPN IGTNSSTTPY PGPNQELGLS YLQTQNTYQP AAGDTTAVMV  240
EPSRHPANAT SALGLLLQSS KFKEMMEMTS MVDCPSTPAE LEQPQSRFPE DIQTFFECPD  300
SSSYGEGDDM IFGDLNSFVP QMFQCDF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30114.m000507
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741600.0AB774160.1 Ricinus communis RcWRI2 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310645.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-98AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9SQW50.0B9SQW5_RICCO; AP2-type transcription factor
STRINGXP_002528384.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-88ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]