PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30099.m001672 | ||||||||
Common Name | LOC8268896, RCOM_1382330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24621.4 Da PI: 10.5082 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 18 | 62 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ k++ + 30099.m001672 18 NESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62 89************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.221 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.43E-33 | 7 | 75 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-26 | 7 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-24 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAKRSKGRQK IDMVKMPNES NLQVTFSKRR SGLFKKASEL STLCGAEIAI IVFSPGKKVF 60 SFGHPGVEVV IDRFLSRNPP QNSPTMQLIE AHRNASVREL NAQLTQVLTQ LEMERKRGEE 120 LNQMRKTGQN RCWWEAPIDD LTMPQLEQLR MSLEQLKKNV AMQADKLLIQ NAQSQQFFAS 180 SSTAPPPPLP NNNFMFNIPN MGTLPGYNNF GYGRGFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-17 | 7 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30099.m001672 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002522085.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 6e-68 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9S7W9 | 1e-160 | B9S7W9_RICCO; Mads box protein, putative | ||||
STRING | XP_002522085.1 | 1e-160 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-69 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | 30099.m001672 |
Entrez Gene | 8268896 |
Publications ? help Back to Top | |||
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