PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30098.m001709

Common Name

LOC8276832, RCOM_1377050

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 298aa MW: 32861.5 Da PI: 8.9773

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30098.m001709	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss 30098.m001709 39 KDHALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 99 68899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	32	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-34	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDTTAQWPQF QGIGVGKPME NSRHNSSSGL ERRSARPQKD HALNCPRCNS TNTKFCYYNN 60 YSLSQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSA SSSSSKKLII NPPDLTPQIG 120 FLHHQNPNNN IKIHHGQDLN LAYAPPSTEN HEYGNMSEFI DVTRSKTHFL NPSPAAMDQL 180 LKTGMSSRGL MLGPFMSMQP LVSDSNTVVF SSSSAGFSLP ELKPTLNFCL EGFNSSSEYG 240 SNAHQGTAGA RLLFPVEDLK QVPTNTNTIE FDDHQQNRGQ DTTGFWNGIL GGGGSYLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30098.m001709

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ402844	6e-66	FJ402844.1 Populus tomentosa Dof1 (Dof1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002515648.1	0.0	dof zinc finger protein DOF1.8 isoform X1
TrEMBL	B9RPH9	0.0	B9RPH9_RICCO; Zinc finger protein, putative
STRING	XP_002515648.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	6e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	30098.m001709
Entrez Gene	8276832