PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30094.m000671 | ||||||||
Common Name | RCOM_1375690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 30413.1 Da PI: 9.2965 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.2 | 9.8e-17 | 85 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY++YAk GF++rk+ +k +++ +i++ ++vC kegkr+++ + +e+++r+r+etr +Ck ++vk ++ + + +v+ ++++H H l+p 30094.m000671 85 FYRAYAKYNGFRIRKHDLRKLSKE-NIMMCKWVCCKEGKRDTKWYDlKEQKHRPRVETRENCKVLFRVKFHQvTVECVVIAFVKKHMHILVP 175 9****************9999555.599999**********998887899999******************9899999**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-13 | 85 | 175 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEFRDKGVKS DMLIPTMQES DNDMIDQKIR DDSVMGEPYD KNRDTNTSIG ENQQVQPDGK 60 MNYCRLSVED VKSMIFQNCD AAEAFYRAYA KYNGFRIRKH DLRKLSKENI MMCKWVCCKE 120 GKRDTKWYDL KEQKHRPRVE TRENCKVLFR VKFHQVTVEC VVIAFVKKHM HILVPPSQVH 180 FLAADRPIKE ADKVQAKSIH MVRSKDEVLG GDAQRTLIYF EASKSKEAYI KIAKGVARIT 240 NALEYLEISH VDDKRQTKHM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30094.m000671 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9SCP4 | 0.0 | B9SCP4_RICCO; Uncharacterized protein | ||||
STRING | XP_002523763.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-15 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | 30094.m000671 |