PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30094.m000671
Common NameRCOM_1375690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 260aa    MW: 30413.1 Da    PI: 9.2965
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30094.m000671genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.29.8e-1785175291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                    fY++YAk  GF++rk+  +k +++ +i++ ++vC kegkr+++  + +e+++r+r+etr +Ck  ++vk ++ + + +v+ ++++H H l+p
  30094.m000671  85 FYRAYAKYNGFRIRKHDLRKLSKE-NIMMCKWVCCKEGKRDTKWYDlKEQKHRPRVETRENCKVLFRVKFHQvTVECVVIAFVKKHMHILVP 175
                    9****************9999555.599999**********998887899999******************9899999**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1385175IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFRDKGVKS DMLIPTMQES DNDMIDQKIR DDSVMGEPYD KNRDTNTSIG ENQQVQPDGK  60
MNYCRLSVED VKSMIFQNCD AAEAFYRAYA KYNGFRIRKH DLRKLSKENI MMCKWVCCKE  120
GKRDTKWYDL KEQKHRPRVE TRENCKVLFR VKFHQVTVEC VVIAFVKKHM HILVPPSQVH  180
FLAADRPIKE ADKVQAKSIH MVRSKDEVLG GDAQRTLIYF EASKSKEAYI KIAKGVARIT  240
NALEYLEISH VDDKRQTKHM
Cis-element ? help Back to Top
SourceLink
PlantRegMap30094.m000671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SCP40.0B9SCP4_RICCO; Uncharacterized protein
STRINGXP_002523763.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1575949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1-related sequence 5