PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30089.m001006
Common NameRCOM_1368840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27763.7 Da    PI: 5.0939
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30089.m001006genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-184094256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++f++eq++ Le+ Fe++ ++  +++  LA +lgL+ rq+ +WFqNrRa++k
  30089.m001006 40 NSKRRFSDEQVRLLESIFESETKLEPRKKLLLAGELGLQPRQIAIWFQNRRARWK 94
                   56789*************************************************9 PP
2HD-ZIP_I/II118.92.7e-3841132293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     krr+s+eqv+lLE+ Fe+e+kLep++K  la eLglqprq+a+WFqnrRAR+k+kq+E++y++L+++yd+l++  ++L++e ++L  +l++
  30089.m001006  41 SKRRFSDEQVRLLESIFESETKLEPRKKLLLAGELGLQPRQIAIWFQNRRARWKSKQIEQEYRKLRASYDKLASCFDSLKNERQSLIIQLQK 132
                    69************************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.7793696IPR001356Homeobox domain
SMARTSM003892.9E-1738100IPR001356Homeobox domain
SuperFamilySSF466896.84E-1839105IPR009057Homeodomain-like
CDDcd000862.80E-143997No hitNo description
PfamPF000461.4E-154094IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1842103IPR009057Homeodomain-like
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PfamPF021835.8E-1596137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSNQIEGKGY DPESPDAKPE TFSFQQLPQT QRKKKDCAKN SKRRFSDEQV RLLESIFESE  60
TKLEPRKKLL LAGELGLQPR QIAIWFQNRR ARWKSKQIEQ EYRKLRASYD KLASCFDSLK  120
NERQSLIIQL QKLNELLGQP CDENRTCKGV DDCTTAITAD NRNVNSDSEA QQGLNNRVFI  180
SSEENQSREI LHSVDEEHER LNSDEYTDGS LASPDQWYSF DSSGQFDLSA SSTQWFNFCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30089.m001006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515621.21e-178homeobox-leucine zipper protein ATHB-12
TrEMBLB9RPF21e-176B9RPF2_RICCO; Homeobox protein, putative
STRINGXP_002515621.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-48homeobox 7