PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002329
Common NameLOC8284524, RCOM_1355780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 702aa    MW: 77133.3 Da    PI: 6.5578
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002329genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23124225199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + ++
  30078.m002329 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAEN 215
                    89****************************996555555..89***********************************************..4488 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+++++r+
  30078.m002329 216 GDLCIGIRRA 225
                    889****996 PP
2Auxin_resp115.54.8e-38290373183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  30078.m002329 290 AATLAANGQPFEVVYYPRASTPEFCVKASMVKAAFQIRWCSGMRFKMAFETEDSSRISWfMGTIASVQVADPLRWPDSPWRLLQ 373
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36118228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29119230IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-21123224No hitNo description
PfamPF023621.9E-21124225IPR003340B3 DNA binding domain
SMARTSM010195.7E-21124226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028124226IPR003340B3 DNA binding domain
PfamPF065074.0E-33290373IPR010525Auxin response factor
PROSITE profilePS5174519.407616699IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MITFMEAKER VKEKEMEKCL DSQLWHACAG GMVQMPAVNT KVFYFPQGHA EHASGSVDFR  60
NFPRLPPYIL CRVSGIKFMA DPETDEVYAK IKLTPICSKE NGMEDEEEGV INGGEGQENK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTILAKDVH GETWKFRHIY  180
RGTPRRHLLT TGWSTFVNHK KLVAGDSIVF LRAENGDLCI GIRRAKRGVG GGPESSWNPA  240
GGNCVMPYGG FNSFFREDGN KLSRSGNGNG PGENALTGKG KVKAESVIEA ATLAANGQPF  300
EVVYYPRAST PEFCVKASMV KAAFQIRWCS GMRFKMAFET EDSSRISWFM GTIASVQVAD  360
PLRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP VIHLSPFSPP RKKLRMPQHP  420
DFPLDSQFPL PTFSGNLLGP TSPFGCLPDN TPAGMQGARH AHYGLPLSDL RLNKLQTSLF  480
LAGFPPPLDH SATHSISSNG PTIVKPSMSE SVSCVLTMAR STQNSGKPDN VKTPQLVLFG  540
QPILTEQQIS LSSSGDTVSP VLTGNSSSEG NLDKIANFSD GSGSALHQQG LPEHSSYEGF  600
QWCKGNRQET EPSLETGHCK VFMESEDVGR TLDLSLLGSY DELYRKLADM FGIENSETLN  660
NVLYRDIAGI VKHIGDEPFS DFMKTARRLT IIMDSSSDNV GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-86339432388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409415PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519531.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9S0L20.0B9S0L2_RICCO; Auxin response factor
STRINGXP_002519531.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]