PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002282
Common NameRCOM_1354410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 65aa    MW: 7284.4 Da    PI: 9.6844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002282genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-091441127
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktI 27
                     +g+W++eEd +l+++++++G+g +W + 
    30078.m002282 14 KGPWSPEEDAKLKEYIERHGTGgNWIAL 41
                     79********************999655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-12544IPR009057Homeodomain-like
SuperFamilySSF466894.41E-8860IPR009057Homeodomain-like
PROSITE profilePS500906.76938IPR017877Myb-like domain
PfamPF002498.3E-81440IPR001005SANT/Myb domain
CDDcd001672.59E-41638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE RHGTGGNWIA LPHKAAVEAI SIYFKEKNKS  60
IRTLT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574838.11e-26transcription factor RAX2 isoform X2
SwissprotQ9SJL73e-25RAX2_ARATH; Transcription factor RAX2
TrEMBLB9S0G55e-41B9S0G5_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002519484.19e-42(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-27MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]