PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004648
Common NameLOC8267335, RCOM_1346980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 265aa    MW: 30190.2 Da    PI: 5.2426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004648genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-3052110259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+
  30076.m004648  52 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSNHNHP 110
                    699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3142112IPR003657WRKY domain
SuperFamilySSF1182901.01E-2549112IPR003657WRKY domain
SMARTSM007741.4E-3551111IPR003657WRKY domain
PROSITE profilePS5081131.00952112IPR003657WRKY domain
PfamPF031065.5E-2553110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDGSPSRKLE SEVSDLKSET RASKRRKVVE KTVVTVKIEA NARKLKNDGP PSDFWSWRKY  60
GQKPIKGSPY PRGYYRCSTS KGCSAKKQVE RCRTDASVLI ITYTSNHNHP GPDLHSTGLN  120
KQLNASQTQP STDDQDHPIT TPKQEEEDEI EKHDQQPVES ISHKDESADH NFHYLQSPVN  180
CSQDIMITQE DHPFIVENSS EETHNTLGIV LDEEPISRPR LMTFSTPASE ENDFFDELEE  240
LPTYSSFTSF MRSNFFDERI PVVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-21521121779Disease resistance protein RRS1
5w3x_D6e-21521121779Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12445RRKVVEKTVVTVKIEANARKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515275.10.0probable WRKY transcription factor 65
TrEMBLB9RND60.0B9RND6_RICCO; Uncharacterized protein
STRINGXP_002515275.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-33WRKY DNA-binding protein 35