PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004607
Common NameLOC8267295, RCOM_1345780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 264aa    MW: 30389.7 Da    PI: 4.8643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004607genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l ++vk +G g+W++ ar+ g++Rt+k+c++rw++yl
    30076.m004607 23 KGPWTVEEDAILTEYVKVHGEGRWNSAARCSGLKRTGKSCRLRWLNYL 70
                     79********************************************97 PP
2Myb_DNA-binding48.81.6e-1576119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
    30076.m004607  76 RGNITLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.541874IPR017930Myb domain
SuperFamilySSF466895.99E-3120117IPR009057Homeodomain-like
SMARTSM007172.5E-142272IPR001005SANT/Myb domain
PfamPF002491.0E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-222477IPR009057Homeodomain-like
CDDcd001671.57E-102570No hitNo description
SMARTSM007171.1E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.59875125IPR017930Myb domain
PfamPF002492.1E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDAQEINYVC QSYPNEEDAD IRKGPWTVEE DAILTEYVKV HGEGRWNSAA RCSGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LQEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKQAKQLKC DVNSKQFRDA MRYIWMPRLI ERIQASSSGS STGQPTTIVN HNDHIAAAAG  180
ETEWRVDPNL IPEPSGTSSD SLDPVSDLTE YQNQSSEEYY KENGSGSWAG EVEMESNGLI  240
LDGGESLESI WNEENIWFLQ QQLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25201254108B-MYB
1h8a_C5e-251812522128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004607
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346641e-54KM034664.1 Jatropha curcas clone JcMYB044 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515235.10.0transcription factor MYB78
SwissprotQ9FGY31e-87MYB78_ARATH; Transcription factor MYB78
TrEMBLB9RN960.0B9RN96_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002515235.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-85myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]