PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004548
Common NameLOC8265869, RCOM_1343180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 498aa    MW: 53862.6 Da    PI: 7.9421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004548genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30259317259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  30076.m004548 259 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTILTTTYEGNHNHP 317
                    7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33243319IPR003657WRKY domain
SuperFamilySSF1182901.83E-27251319IPR003657WRKY domain
PROSITE profilePS5081129.493253319IPR003657WRKY domain
SMARTSM007742.2E-36258318IPR003657WRKY domain
PfamPF031061.3E-26260317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEKELTFFNS SDLLRQSSDQ LTENSMPRGK SIIKEVDFFS ADRNCDQEMK DASSSSAVLV  60
DFGLNTGLDL LTPSSGISET ANGNKPNIRE MRKLQAELER LHDENKKLRS MLDQITKSYK  120
ELQAQLLVAM QKQPHGNRGE QKGEMNGKTS RIMSAQQFLD PRPSAALEVN DNPSVSEDKA  180
QDVSVSPINT TTTTTEAMSQ INAGNKQDCT EDGLDQTSQS WGSPKSARLE QENKDRIPEV  240
PFRKARVSVR ARSEAPLITD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA  300
EDKTILTTTY EGNHNHPLPP AATAMANTTS AAAAMLLSGS STSKEGLPSN STFFPSLPYA  360
STMATLSASA PFPTITLDLT QSPNSMSFLR ANPSTTFPLP LQGCPQLLGH PLYVPPKLPT  420
VAIPSLQLGQ RHASMVETVT AAIASDPNFT AALAAAISTI IGTQRSTNRS SNTNTPDGLP  480
GLPGSPQLPQ SCTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22245321176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515176.10.0probable WRKY transcription factor 47
TrEMBLB9RN370.0B9RN37_RICCO; WRKY transcription factor, putative
STRINGXP_002515176.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-81WRKY family protein