PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004542
Common NameRCOM_1343120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 584aa    MW: 64257.9 Da    PI: 8.7825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004542genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-15384430455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+  Er+RRd+iN+++  L+ l+P++      K++Ka++L kA+eY+k Lq
  30076.m004542 384 VHSLSERKRRDKINKKMRALQALIPNS-----DKVDKASMLDKAIEYLKTLQ 430
                    6999**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-18377438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-16378434No hitNo description
PROSITE profilePS5088816.698380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-19381451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12384430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-16386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MFELLLTIAF LCRAASDEFM ELVWENGQIL TRGRSTSPSC ISYSSQNPKP KVNTIGEDIY  60
PRKRPRLGAM NSVLGLSSRQ EFAKSERLLQ DHHSEFSKFT ESSKNSASDK KIIEPRILPV  120
CQGDNSTAGN ASVGEIPQLR QASNDQLQNQ SSLQQCQVSA FFSRSTMDGS QSPSMGEFPY  180
SNSKQFKSSG PVKYLGLRNF SLFLPGVVPP KANDQHQSAT CSAGDPSSSR VQELEINKQK  240
SAAALVDPVT GSENAKKSYK CPDQVATELD QARHITVSAK ESLPDEQSEA PISRNDSKSK  300
RIPDPTSSLE ANTFRRKPNA EKYIDQLAAA TSICSRRASN DLTHSSLKRT NAHLKEMASP  360
SENADEEEEI PKSTSTKKKR IPQVHSLSER KRRDKINKKM RALQALIPNS DKVDKASMLD  420
KAIEYLKTLQ LQLQMMSMRG SCYMPPMMIP TALQQIQAPY LSHFSPMMGM RMPMSPSLFS  480
NSAILGLAAG QMQPMAPMTS QTPFVPLVGG SSMQSTSTVT PFCGAAAAMP VKPIGLADPF  540
SNLKEAVQNI NSDMTGNVVN SQYEESFQVC EVHYLSIFSF LFDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377392KKRIPQVHSLSERKRR
2388393ERKRRD
3389394RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1474661e-46KX147466.1 Manihot esculenta cultivar KU50 phytochrome interacting factor 3-like 1 protein (PIL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012428.10.0transcription factor PIF3 isoform X1
RefseqXP_025012429.10.0transcription factor PIF3 isoform X1
RefseqXP_025012430.10.0transcription factor PIF3 isoform X1
RefseqXP_025012431.10.0transcription factor PIF3 isoform X1
TrEMBLB9RN310.0B9RN31_RICCO; Uncharacterized protein
STRINGXP_002515170.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-29phytochrome interacting factor 3