PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30076.m004476

Common Name

RCOM_1340970

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 273aa MW: 31994.7 Da PI: 5.9144

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30076.m004476	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.9	1.3e-38	5	138	3	126
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k................kvka..eekewyfFskrdkkyatgkrknratk 79 G+rFhP+d elv++yL++k+ g++ e+ i+e++++ +ePw+Lp k + +++ wyfF++ + ky+++kr r+t+ 30076.m004476 5 IGYRFHPSDVELVDHYLRQKMFGNDDEV-WQIAEINVLGFEPWELPgKsiyisfclvnsvhsimL--SnpNDQVWYFFCTPNYKYSNSKRVDRTTT 97 69*********************999.66***********6589999999887776532..145888******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 +gyWk tgkd+++++ + +kktLvfy+gr pkg++t+W+mhey 30076.m004476 98 AGYWKVTGKDRKIKD-----IAIKKTLVFYQGR-PKGVRTNWIMHEY 138 *********98.....9*****765.789******** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.987	3	158	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-41	4	157	IPR003441	NAC domain
Pfam	PF02365	3.0E-23	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDTGIGYRFH PSDVELVDHY LRQKMFGNDD EVWQIAEINV LGFEPWELPG KSIYISFCLV 60 NSVHSIMLSN PNDQVWYFFC TPNYKYSNSK RVDRTTTAGY WKVTGKDRKI KDIAIKKTLV 120 FYQGRPKGVR TNWIMHEYIP TFDFPTERDF VICKIKRNAD SEDPPNFEEG EPSTAIAAYT 180 ENHNYYSTFE GEELTRSLES GSGNYATEVR ISSMTLTRNK IYKYAIKNKA HQVSTLFIQE 240 DTQVQAYVQS FHGYDEKDYN LDSAFQWPNN YYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	6	161	20	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	6	161	20	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	6	161	20	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	6	161	20	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	6	161	23	171	NAC domain-containing protein 19
3swm_B	2e-29	6	161	23	171	NAC domain-containing protein 19
3swm_C	2e-29	6	161	23	171	NAC domain-containing protein 19
3swm_D	2e-29	6	161	23	171	NAC domain-containing protein 19
3swp_A	2e-29	6	161	23	171	NAC domain-containing protein 19
3swp_B	2e-29	6	161	23	171	NAC domain-containing protein 19
3swp_C	2e-29	6	161	23	171	NAC domain-containing protein 19
3swp_D	2e-29	6	161	23	171	NAC domain-containing protein 19
4dul_A	1e-29	6	161	20	168	NAC domain-containing protein 19
4dul_B	1e-29	6	161	20	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30076.m004476

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572349.1	1e-163	NAC domain-containing protein 62
TrEMBL	B9RMW6	0.0	B9RMW6_RICCO; Uncharacterized protein
STRING	XP_002515105.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	2e-35	NAC 014

Link Out ? help Back to Top
Phytozome	30076.m004476