PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004471
Common NameLOC8270772, RCOM_1340820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 450aa    MW: 51277.5 Da    PI: 6.6936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004471genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-31125229199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  30076.m004471 125 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsGKH 220
                    89****************************66677899*************************************************665777888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l++ ++r+
  30076.m004471 221 RLYIDWRRR 229
                    899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-42116235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-30122229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-26123224No hitNo description
PfamPF023624.5E-29125229IPR003340B3 DNA binding domain
SMARTSM010192.2E-23125230IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72125230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNFVEQEREY CDKGEEQEEE EEEEEEEEEE TIMTTTSMLP FPSPSSPSSS ATAKYRNFLP  60
QHHNSLWLAS SDHSQQDNKT QESSLNFDKK LDLMDLSLGN DNRTLNTSTS TAGASSGSIE  120
REHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSSNEK GLLLNFEDRN GKLWRFRYSY  180
WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESGKH RLYIDWRRRP NAPDPTSFTH  240
LELQNQLHFP QSVRWGRLYS LPQPLSVPRV PFEQSQFHHL NYTIQPYIHN HHDHHYHHHQ  300
QQQQVTSYGN AAAPQYYLRP SPPPPLPSPG TVRIGAVHHH HHPQQQQEEG GDKGSMVIDS  360
IPIVNGRSAG KRLRLFGVNM ECPTQDDQYS SSSDNLPHGS TVLSSFFPHL ASHSRPPSSS  420
GASMPTSRQA DAHHEFPKKG KTSLSFDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661202323116B3 domain-containing transcription factor NGA1
5os9_B2e-661202323116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515100.10.0B3 domain-containing transcription factor NGA1
TrEMBLB9RMW10.0B9RMW1_RICCO; Uncharacterized protein
STRINGXP_002515100.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-68B3 family protein