PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30075.m001182 | ||||||||
Common Name | LOC8265526, RCOM_1338220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 213aa MW: 23442.8 Da PI: 9.6049 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.1 | 1.3e-32 | 117 | 173 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +ksrkpylheSRh+hAlrR+Rg gGrF 30075.m001182 117 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IKSRKPYLHESRHQHALRRARGLGGRF 173 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.4E-37 | 115 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.1 | 116 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-27 | 118 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-23 | 119 | 141 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 121 | 141 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.2E-23 | 150 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MTSSVHDHSD NSDANEQQQK LSETQNQSSP PATAMVHPGI STPNAHYTTS RQLGSGHAMA 60 AGGAAAYPYP DPYYRSIFAP YDAQPYPPQP YGGQPMVHLQ LMGIQQAGVP LPSDTVEEPV 120 FVNAKQYHGI LRRRQSRAKA ESENKVIKSR KPYLHESRHQ HALRRARGLG GRFLNAKKNQ 180 HQEQNEMASG DKSQSNINLN SDKSDIVSSD GKS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 116 | 179 | 1 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30075.m001182 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002523193.1 | 1e-157 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_025013858.1 | 1e-157 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Swissprot | Q84JP1 | 6e-66 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | B9SB33 | 1e-155 | B9SB33_RICCO; Nuclear transcription factor Y subunit A-4, putative | ||||
STRING | XP_002523193.1 | 1e-156 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-38 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30075.m001182 |
Entrez Gene | 8265526 |
Publications ? help Back to Top | |||
---|---|---|---|
|