PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30074.m001421
Common NameRCOM_1334000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 284aa    MW: 30982.4 Da    PI: 6.796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30074.m001421genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08204242648
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L +Av
  30074.m001421 204 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAV 242
                    689*********************7....6889******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-10201243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-7202242No hitNo description
Gene3DG3DSA:4.10.280.104.0E-9203243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5204242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-4204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQPTPSSGGG GGGGGGENRV GLARFRSAPP TWLEALLEEE EEEEDPLKPT QTLTQLLASN  60
TTRNSLPFGP SSSSVVEPGG GSNLFEPGGG GGFQRQHSSP ADFLVNSGIG NDGYFANFGI  120
PPNYEYISPN MDVSPSGKRT RDVQLQHSSA NKYPPLLKGE QSSQVPGGGD GMSSLIEMEM  180
EKLLEDSVPC RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLDE  240
AVGNSRNIKG NAHAWPKNNR KEHLCYFHTR ERRFQFSSIL DETA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30074.m001421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576439.11e-167transcription factor bHLH80 isoform X3
SwissprotQ9C8P88e-75BH080_ARATH; Transcription factor bHLH80
TrEMBLB9S7580.0B9S758_RICCO; DNA binding protein, putative
STRINGXP_002521827.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-61bHLH family protein