PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30072.m000930
Common NameLOC8286482, RCOM_1320870
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 506aa    MW: 54983.1 Da    PI: 6.4146
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30072.m000930genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73e-39109168261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  30072.m000930 109 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 168
                    7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-30102166IPR003851Zinc finger, Dof-type
PfamPF027018.0E-32111167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.705113167IPR003851Zinc finger, Dof-type
PROSITE patternPS013610115151IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MNNSSSITSN NMPQSKDPAF KLFGRKIPVP DTQIPAKPEF KNSCNDSIKG ETDIYDEDNT  60
GEQDKLSATG QTKEERQTPK QVNEEAQSGP KDDQVETNST DQEKVFKKPD KILPCPRCNS  120
LDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPIGA GRRKNKHLAS QYRQILVSSD  180
GVPITRIENS ESTNHQLISS VESATTLRPS TTGNEVVLKF GSEAPLCESM ETVLNLGDQK  240
RYAEMSSANC RDNGEEPSSC GSSMTSSSCR GNELPETVTQ KELVGMPGST NELNVPHSLH  300
CYPVPPWVFP WNPNWNNATS ITTAQHSTGQ PCMPNSNNSN QVQWCPTPIL AVPSFCPPSI  360
PLQLVPASYL GCMPVWGAGA GNISVNGSNG CSSPSSSTST SCCSGNGSPK LGKHSRDANL  420
MGEEQVENCV LVPKTLRIDD PNEASKSPLW ATLGLKLDQK NPASKGTIFK TSETKEEGKG  480
HVPESAHILE ANPAALSRST TFQESS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30072.m000930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525674.10.0cyclic dof factor 1
TrEMBLB9SI550.0B9SI55_RICCO; Uncharacterized protein
STRINGXP_002525674.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.17e-46cycling DOF factor 3