PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002645
Common NameLOC8278506, RCOM_1315820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 340aa    MW: 38681 Da    PI: 9.4501
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002645genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32201254255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  30068.m002645 201 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 254
                    9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.61E-15198254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28199254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23201254IPR006447Myb domain, plants
PfamPF002492.1E-7202253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PTSTWRRTEE EIDLGFWKRA LDSRARPDSS CFELSLSNPR  60
ISESSKHFHL LQNSNNYNGT NLFNSFQQNQ YPHHQQPKSH LLHQHSPHFQ QQQHHQQQQP  120
GLSQDLGFLR PIRGIPVYQN PPTTPPFPFS HPQTLDNSCS QTSSLATNNS TTTNIGHFQS  180
QGLMRSRLMS RFPAKRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL  240
TLAHVKSHLQ MYRTVKTTDR AAASSGQSDI FDNGSSGDTS EDLMFEIQNS RRSDISMQQG  300
RPNGHHDKDY QGLWSNSSRE AWLHVKSKDS CGNLTSLEVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518978.10.0probable transcription factor KAN2 isoform X2
SwissprotQ9C6164e-85KAN2_ARATH; Probable transcription factor KAN2
TrEMBLB9RZ090.0B9RZ09_RICCO; Transcription factor, putative
STRINGXP_002518978.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-64G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]