PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30068.m002615

Common Name

LOC8288881, RCOM_1314720

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Protein Properties

Length: 406aa MW: 44897 Da PI: 7.597

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30068.m002615	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.1	1.3e-31	103	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + 30068.m002615 103 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLLLNFEDKTGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEaAKD 198 89*************************9555568889**********************************************655888888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l++ ++r+ 30068.m002615 199 RLYIDWRRR 207 999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-41	97	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-29	99	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.14E-27	101	190	No hit	No description
PROSITE profile	PS50863	14.494	103	208	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.7E-29	103	207	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-23	103	208	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MEIGSAAGII STEEEQMSKG KHLPFSYSSS SSPSSSSSQH KPHHLLALSQ IYDKNHHPQV 60 GSWLGSKYDP EQEDAGSAAG IFEEEEGSGE GECGVVIQKE HMFDKVVTPS DVGKLNRLVI 120 PKQHAEKYFP LDSSTNDKGL LLNFEDKTGK AWRFRYSYWN SSQSYVMTKG WSRFVKDKKL 180 DAGDIVSFQR GVGEAAKDRL YIDWRRRPDG PHHQPTHRHQ QHHLSSIPWS PLLMRPPPVP 240 RDHFHLSNPN YYNSSGGGGG ASAYGFGYGY NSSNNYNYNS NVGSSNSGTI IYMRSPQQAG 300 MVQWQQAAAS SGGFMEPMVF ESVPVVQGKA AAKRLRLFGV NMDCPISDSD HECDKLSTST 360 PIPAMAAALQ QPSHHPLQLR LYNGTPLPSP QFLHKGKSSM SLDLDI

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MEIGSAAGII STEEEQMSKG KHLPFSYSSS SSPSSSSSQH KPHHLLALSQ IYDKNHHPQV  60
GSWLGSKYDP EQEDAGSAAG IFEEEEGSGE GECGVVIQKE HMFDKVVTPS DVGKLNRLVI  120
PKQHAEKYFP LDSSTNDKGL LLNFEDKTGK AWRFRYSYWN SSQSYVMTKG WSRFVKDKKL  180
DAGDIVSFQR GVGEAAKDRL YIDWRRRPDG PHHQPTHRHQ QHHLSSIPWS PLLMRPPPVP  240
RDHFHLSNPN YYNSSGGGGG ASAYGFGYGY NSSNNYNYNS NVGSSNSGTI IYMRSPQQAG  300
MVQWQQAAAS SGGFMEPMVF ESVPVVQGKA AAKRLRLFGV NMDCPISDSD HECDKLSTST  360
PIPAMAAALQ QPSHHPLQLR LYNGTPLPSP QFLHKGKSSM SLDLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-66	99	208	4	114	B3 domain-containing transcription factor NGA1
5os9_B	2e-66	99	208	4	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30068.m002615

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002518948.1	0.0	B3 domain-containing transcription factor NGA1 isoform X2
Swissprot	O82799	2e-79	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	B9RYX9	0.0	B9RYX9_RICCO; Transcription factor, putative
STRING	XP_002518948.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	8e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	30068.m002615
Entrez Gene	8288881

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]