PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30068.m002588 | ||||||||
Common Name | LOC8288854, RCOM_1313650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRF | ||||||||
Protein Properties | Length: 507aa MW: 55321.1 Da PI: 6.8201 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 9.3e-24 | 192 | 235 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e 30068.m002588 192 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 235 79***************************************987 PP | |||||||
2 | QLQ | 53 | 1e-18 | 129 | 164 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQlq+L++Q +yK+++a+ PvPpeLl +i+k 30068.m002588 129 PFTAAQLQELERQTIIYKHMMASIPVPPELLIPITK 164 9********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-11 | 128 | 164 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-13 | 129 | 162 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.862 | 129 | 164 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.402 | 192 | 236 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-19 | 193 | 235 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MGTRSGVSFV GSKKEDKAKD LEVLRMQAKE SYRVMSEDHH HHEGSTQLLP SSSSSSSSCS 60 GSFDGGGSGA GAGGPLFYSR SNRVACFGDI YDVVGASDAD AVLAGSKFSS FTFNLSGEMT 120 PSSMNMGVPF TAAQLQELER QTIIYKHMMA SIPVPPELLI PITKTQSNAS PTQFHVVKGS 180 LEMGISSCTN SDPEPWRCKR TDGKKWRCSR DVAPDQKYCE RHSHKSRPRS RKPVELHTDS 240 MASNSNNYIT NTQLLNQKPH FPSQTNSHLS NFPSAMVSAS ATAANSFNQP RGLEWFLKGE 300 TAPVPSNSDQ EWHYLKQDRI KGSDEKLYHY REGQYDSNSY MNLRDNSHSL QAHRLNENCS 360 LLLSPKSTIL NPSSQTQAQE TRHFLDAWST AMRESNAGGL DHDQCSDSSS EKILPLSTLT 420 LSMCGVSQTN EENDNGQASS TFGIMGSDKD AASVLRPHWM MNHGSWMSSP PGGPLAEALC 480 LGISNSTRAD SNLASSNGSS YDINNNS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30068.m002588 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518921.1 | 0.0 | growth-regulating factor 8 isoform X1 | ||||
TrEMBL | B9RYV2 | 0.0 | B9RYV2_RICCO; Uncharacterized protein | ||||
STRING | XP_002518921.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13894 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 9e-43 | growth-regulating factor 8 |
Link Out ? help Back to Top | |
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Phytozome | 30068.m002588 |
Entrez Gene | 8288854 |