PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30064.m000506
Common NameLOC8266254, RCOM_1303670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 559aa    MW: 61323.4 Da    PI: 6.9082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30064.m000506genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30334392259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK  kg+++pr+YYrCt++ gCpv+k+v+rs ed  v+++tYeg+Hnh+
  30064.m000506 334 SDGCQWRKYGQKLAKGNPCPRAYYRCTMSsGCPVRKQVQRSVEDRAVLITTYEGHHNHP 392
                    7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-32318394IPR003657WRKY domain
SuperFamilySSF1182903.4E-27326394IPR003657WRKY domain
PROSITE profilePS5081130.148328394IPR003657WRKY domain
SMARTSM007741.0E-35333393IPR003657WRKY domain
PfamPF031069.4E-27335392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDEERQLSIG TDDPTRTSNC SIISDPPPTM NPTWKHDTLL VDGSSADRLL ISCFTDNTHH  60
PSQAISNGKR VLTEMDFFAH RNFSKQKSSP TADIIIKQEI RYDGDDHDEL EHQKKKQHVN  120
TGLNLVTGTM VSDKSMVDDG PSQNKQDYQQ KMKELDILQA EINHINSENQ RLRGMIHQVN  180
NNYHALQMHL GALMQNPKAK TEKQEEVVNE RHRRSITVAR QFLDLGKAEI VELKNDHRNS  240
QSTTEERSGD CSISPNIVES MEINDKSPTH ISNPINGNAD YQSSEAAFHG WVPNKVPKFI  300
SSKDVNHEQK EETMSMIRKA RVSVRAISDA STISDGCQWR KYGQKLAKGN PCPRAYYRCT  360
MSSGCPVRKQ VQRSVEDRAV LITTYEGHHN HPLPPAAMAM ASTTSAAAAM LLSGSTSSPD  420
GLVNTNLLAK ATPYSCPPGF ASLSASAPFP TVTLDLTHTP AVANSSQRIT QDHQFHLATA  480
PQFFGPGLCN QARVSGIFSP QGMDQLQPTD VSAATAAITS DPNFTAALVA AITSVIGNVQ  540
ANSSTSNSPS TRNSIENNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21320396176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30064.m000506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529927.10.0probable WRKY transcription factor 31
TrEMBLB9SVA80.0B9SVA8_RICCO; WRKY transcription factor, putative
STRINGXP_002529927.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-88WRKY family protein