PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30063.m001417
Common NameLOC8262632, RCOM_1298710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 421aa    MW: 47846.1 Da    PI: 6.9405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30063.m001417genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50461712128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s+++
  30063.m001417  46 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENS 140
                    79***************************.89***************8778899****************************************** PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    + +glkktLvfy+g+apkg +t+W+m+eyrl
  30063.m001417 141 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 171
                    *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5645191IPR003441NAC domain
PROSITE profilePS5100555.91245192IPR003441NAC domain
PfamPF023656.7E-2547171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAIAATMSLT ANHDDNPSSN TSARKHHHHA AAAADDDDDH EHDMVMPGFR FHPTEEELVE  60
FYLRRKVEGK RFNVELITFL DLYRYDPWEL PALAAIGEKE WFFYVPRDRK YRNGDRPNRV  120
TTSGYWKATG ADRMIRSENS RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERYQ  180
KAEISLCRVY KRAGVEDHPS LPRSLSSRAS SSRGLQSDKK LQPPQLGMES FQVFGGGGQS  240
ISQQIELEKI SAETDGSSSS DVTTALGLSK PANVYHPVPA ISTSLGLPAT IEEEAEEIFL  300
NQSRQACSLV PNNNNNNLFT GSSSVSSNPV DDLHRLVNYQ QACISQQQQQ YYNTHHHQHH  360
QQQQQQQHQH SQFSIMAPQS QSLALNMLPN SLPTAFPERL WEWNPLPEAN RDQYNVNNPF  420
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-554719219165NO APICAL MERISTEM PROTEIN
1ut4_B3e-554719219165NO APICAL MERISTEM PROTEIN
1ut7_A3e-554719219165NO APICAL MERISTEM PROTEIN
1ut7_B3e-554719219165NO APICAL MERISTEM PROTEIN
3swm_A4e-554719222168NAC domain-containing protein 19
3swm_B4e-554719222168NAC domain-containing protein 19
3swm_C4e-554719222168NAC domain-containing protein 19
3swm_D4e-554719222168NAC domain-containing protein 19
3swp_A4e-554719222168NAC domain-containing protein 19
3swp_B4e-554719222168NAC domain-containing protein 19
3swp_C4e-554719222168NAC domain-containing protein 19
3swp_D4e-554719222168NAC domain-containing protein 19
4dul_A3e-554719219165NAC domain-containing protein 19
4dul_B3e-554719219165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30063.m001417
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051480.0KR605148.1 Manihot esculenta NAC transcription factors 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519375.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-127NAC35_ARATH; NAC domain-containing protein 35
TrEMBLB9S0560.0B9S056_RICCO; NAC domain-containing protein, putative
STRINGXP_002519375.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-114NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]