PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30056.m000858 | ||||||||
Common Name | RCOM_1284760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 19607.4 Da PI: 10.3484 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.8 | 2.4e-10 | 95 | 167 | 9 | 87 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ sg + +p +f++++++++++++tl++++ r+W+vkl + +r +l++G F++ n++++gD+++F+l++ 30056.m000858 95 EAFPSGKIHVPLNFMAKCSNQSTTNVTLQVKN---RQWNVKL--ISYASRGILSAGRPAFAH-NNVQAGDVCIFELINA 167 567788899*********98877766666555...*******..666666689*******86.88**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 7.3E-8 | 94 | 167 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.93E-10 | 94 | 167 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-8 | 97 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-10 | 100 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MMLFVTRSLK EKSPVSSGQP LKKKKLENPT RQYKGTANTR VIIYSSGISI GNSEELNHEK 60 QNATGKKIIK GTYDEAANKL TENILQSGHQ VRLSEAFPSG KIHVPLNFMA KCSNQSTTNV 120 TLQVKNRQWN VKLISYASRG ILSAGRPAFA HNNVQAGDVC IFELINAAKG LDFEETW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30056.m000858 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025012734.1 | 4e-88 | LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | B9RTD3 | 1e-129 | B9RTD3_RICCO; Uncharacterized protein | ||||
STRING | XP_002517002.1 | 1e-129 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Link Out ? help Back to Top | |
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Phytozome | 30056.m000858 |