PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30055.m001550 | ||||||||
Common Name | RCOM_1280800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 443aa MW: 48661.4 Da PI: 7.1626 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.6 | 1.8e-10 | 193 | 234 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L 30055.m001550 193 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 234 6889*************************9877777766666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-7 | 190 | 267 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.186 | 192 | 236 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-7 | 193 | 235 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.64E-7 | 194 | 237 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.2E-8 | 195 | 238 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 197 | 212 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence Send to blast |
MASHGIGGTG LSDSGPSNHH LSYAAALHGI NTSTNFMNQE GSAFDFGELE EAIVLQGVKI 60 RNDEAKAPLF TVTGRPAATL EMFPSWPMRF QHTPRGSSKS GGESTDSGSA VNTLSSKADA 120 QLEPESPISK KASSDHQGFD QKHLQLQQQQ QQLEMASDTS RTGGGGPSEL NPSPAKTPQE 180 KRKGSTSEKQ LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLTQL EQDLQRARQQ 240 GLFLGGCGGA GGNLSSGAAI FDMEYARWLE EDHRHMSDLR TGLQAHLSDG DLRMLMTQLD 300 PLTEQQFMGI YSLQQSSQQA EEALSQGLEQ LQQSLVDTIA SGPVVDGMQQ MAVALGKLAN 360 LEGFVRQADN LRQQTLHQLR RILTVRQGAR CFLVIGEYYG RLRALSSLWA SRPRESMMGD 420 DNSCQITTDL QMVQQSQNHF TNF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30055.m001550 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015577690.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor TGA9 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | B9SCS7 | 0.0 | B9SCS7_RICCO; DNA binding protein, putative | ||||
STRING | XP_002523796.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-149 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30055.m001550 |
Publications ? help Back to Top | |||
---|---|---|---|
|