PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30055.m001550
Common NameRCOM_1280800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 443aa    MW: 48661.4 Da    PI: 7.1626
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30055.m001550genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.8e-10193234445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  30055.m001550 193 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 234
                    6889*************************9877777766666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-7190267IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186192236IPR004827Basic-leucine zipper domain
PfamPF001701.0E-7193235IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-7194237No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-8195238No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MASHGIGGTG LSDSGPSNHH LSYAAALHGI NTSTNFMNQE GSAFDFGELE EAIVLQGVKI  60
RNDEAKAPLF TVTGRPAATL EMFPSWPMRF QHTPRGSSKS GGESTDSGSA VNTLSSKADA  120
QLEPESPISK KASSDHQGFD QKHLQLQQQQ QQLEMASDTS RTGGGGPSEL NPSPAKTPQE  180
KRKGSTSEKQ LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLTQL EQDLQRARQQ  240
GLFLGGCGGA GGNLSSGAAI FDMEYARWLE EDHRHMSDLR TGLQAHLSDG DLRMLMTQLD  300
PLTEQQFMGI YSLQQSSQQA EEALSQGLEQ LQQSLVDTIA SGPVVDGMQQ MAVALGKLAN  360
LEGFVRQADN LRQQTLHQLR RILTVRQGAR CFLVIGEYYG RLRALSSLWA SRPRESMMGD  420
DNSCQITTDL QMVQQSQNHF TNF
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30055.m001550
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577690.10.0LOW QUALITY PROTEIN: transcription factor TGA9
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLB9SCS70.0B9SCS7_RICCO; DNA binding protein, putative
STRINGXP_002523796.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-149bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]