PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30054.m000819
Common NameRCOM_1279000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 275aa    MW: 31547.2 Da    PI: 8.4827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30054.m000819genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14101152155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  30054.m000819 101 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 152
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-1299156No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1499155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1799171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTLETVSSSE FLNFIVYDTI SATPYSSSHD SLQTTSLLLE TTLKPQNHGT AMRSCSLMTR  60
QRRLKEPEAA AEWRQNLAVQ GRKKRRRKPR VCQNKEEAET QRMTHIAVER NRRKQMNEHL  120
AVLRSLMPES YVQRGDQASI VGGAIEFVKE LEHLLQSLEV QKMQLLHGQR EPNEDTCTAS  180
KFLPPPFAQF FIYPQYTWSQ MPNKYTSKTI AAIADIEVTL IETHANLRIL SRRSPRKLPK  240
VLMQLEEECQ LTSADDIAGA VHHMLRIIEE EAALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RKKRRRK
28188RKKRRRKP
38287KKRRRK
4101112RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30054.m000819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579934.11e-180LOW QUALITY PROTEIN: transcription factor bHLH71-like
TrEMBLB9SNU70.0B9SNU7_RICCO; DNA binding protein, putative
STRINGXP_002527666.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.16e-60beta HLH protein 71