PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30054.m000802
Common NameLOC8289069, RCOM_1278140
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 510aa    MW: 55981.2 Da    PI: 4.5769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30054.m000802genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.9e-36421332102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  30054.m000802  42 FLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSI 128
                    9********************999*****************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k 
  30054.m000802 129 SRRKP 133
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-4034126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-3638131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-6438131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-204265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDSAITDGGG DASTSSGGGG GQQLPAVSPV PISTASNAPP PFLSKTYDMV DDPATDAVVS  60
WSPTNNSFVV WNPPEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKSISR RKPAHGHGHQ QAQQPHGQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE  180
LVRLRQQQQT TDSQLQTMVQ RLQGMEQRQQ QMMSFLAKAM QSPGFFAQFV QQQNESNRRI  240
TEANKKRRLK QDGIPENESS TSPDGQIVKY QPLVNEAAKA ILRQIMKSNA EATSYNNGLE  300
GFLIGSDSPT SSRMESGGSS NRISGVTLQE VPPTSGQSTY LPAASGQTAH GPTTSISEMK  360
SSLCIDGSKK LTASQFPDIS ALVGSEEAPS ISIPQSDVVM PPLSQIPDMA PESIVDEDYM  420
QPESVDDEFM DLTSLGIGNP DTDIDILLEN SSFWDELVQS PVPEDIESSS VDVQTKENDV  480
RPMDNGWNNT QRMDQLTEQM GLLTSETKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2911313129Heat shock factor protein 1
5d5v_B2e-2911313129Heat shock factor protein 1
5d5v_D2e-2911313129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243250NKKRRLKQ
2244249KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30054.m000802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527650.10.0heat shock factor protein HSF8
SwissprotQ401521e-180HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLB9SNT10.0B9SNT1_RICCO; Heat shock factor protein HSF8, putative
STRINGXP_002527650.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-134heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]